PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03424.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 170aa    MW: 18760.9 Da    PI: 9.5405
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03424.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-201867255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr+++ +gr++AeIrdp++   ++r++lg+f+t+e Aa+a+++a+ +++g
  Rsa1.0_03424.1_g00001.1 18 RYRGVRRRP-WGRYAAEIRDPTK---KTRVWLGTFDTPEAAARAYDKAAFQFRG 67
                             7********.**********864...6***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-321875IPR001471AP2/ERF domain
PfamPF008472.9E-141867IPR001471AP2/ERF domain
PROSITE profilePS5103224.7641875IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-231876IPR016177DNA-binding domain
CDDcd000182.45E-231875No hitNo description
SMARTSM003801.1E-361881IPR001471AP2/ERF domain
PRINTSPR003676.0E-111930IPR001471AP2/ERF domain
PRINTSPR003676.0E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAPTVKPNGG DGGNKENRYR GVRRRPWGRY AAEIRDPTKK TRVWLGTFDT PEAAARAYDK  60
AAFQFRGAKA KTNFPLPFFV GGDNESPSQS STVESPTSTT IPDLNLGCFS SADSRFPFPK  120
IQVKSGVIVF DEESARSESD SSSVVMDLSS ERRPRVFLDL DLNLPPKPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-221576264ATERF1
3gcc_A1e-221576264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8877551e-169DQ887755.1 Brassica rapa subsp. pekinensis putative ethylene-responsive element binding factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109733.15e-80PREDICTED: ethylene-responsive transcription factor 11-like
SwissprotQ9C5I35e-53ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLA0A078DLJ45e-80A0A078DLJ4_BRANA; BnaA08g18380D protein
TrEMBLM4D3275e-80M4D327_BRARP; Uncharacterized protein
STRINGBra010880.1-P1e-79(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.11e-38ERF domain protein 11